Input an evidence file from MaxQuant and a file containing a list of proteins of interest (optional). The function will summarize from the evidence file and report back the average intensity, average retention time, and the average caliberated retention time. If a list of proteins is provided, then only those proteins will be summarized and returned.
artmsAvgIntensityRT( evidence_file, protein_file = NULL, output_file = FALSE, verbose = TRUE )
(char) The filepath to the MaxQuant searched data (evidence) file (txt tab delimited file).
(char) The file path to a file or vector containing a list of proteins of interest.
(char) The file name for the results
(must have the extension
An R object with the results and a file with the results (if the output_file argument is provided). It contains averages of Intensity, Retention Time, Caliberated Retention Time
ave_int <- artmsAvgIntensityRT(evidence_file = artms_data_ph_evidence)#>#>#>#>#>