It takes as input the imputedL2fcExtended.txt results generated by the artmsAnalysisQuantifications() function and generates the PHOTON input file. Please, notice that the only species suported by PHOTON is humans.

artmsPhotonOutput(inputFile, output_dir = ".", verbose = TRUE)

Arguments

inputFile

(char) the imputedL2fcExtended.txt file name and location

output_dir

(char) Name of the folder to output results (Default: current. Recommended: "photon_input_files" or similar)

verbose

(logical) TRUE (default) to show function messages

Value

Multiple output files (inputs of phosfate)

Examples

# \donttest{ artmsPhotonOutput(inputFile)
#> Error in is.data.table(input_file): object 'inputFile' not found
# }