Relative quantification using MSstats including:

  • plots

  • quantifications (log2fc, pvalues, etc)

  • normalized abundance values

artmsQuantification(yaml_config_file, data_object = FALSE, verbose = TRUE)

Arguments

yaml_config_file

(char) The yaml file name and location

data_object

(logical) flag to indicate whether the configuration file is a string to a file that should be opened or

verbose

(logical) TRUE (default) shows function messages

Value

The relative quantification of the conditions and comparisons specified in the keys/contrast file resulting from running MSstats, in addition to quality control plots (if selected)

Examples

# \donttest{ artmsQuantification("artms-ab-config.yaml")
#> Warning: cannot open file 'artms-ab-config.yaml': No such file or directory
#> Error in readLines(con): cannot open the connection
# }