Converts the normal MSStats results.txt file into "wide" format where each row represents a unique protein's results, and each column represents the comparison made by MSStats. The fold change and p-value of each comparison will be its own column.
artmsResultsWide( results_msstats, output_file = NULL, select_pvalues = c("adjpvalue", "pvalue"), species, verbose = TRUE )
(char) Input file name and location
(char) Output file name and location
(char) Specie name for annotation purposes.
(output file tab delimited) reshaped file with unique protein ids and as many columns log2fc and adj.pvalues as comparisons available
ph_results_wide <- artmsResultsWide( results_msstats = artms_data_ph_msstats_results, output_file = NULL, species = "human")#>